Web-Based Resources for Basic Cancer Research
- Animal Models:Distributors and Animal Production Services
- Animal Models:Phenotypes for Genetically Defined and Genetically Engineered Animals
- Cancer Genetics and Genomics
- Pathology & Images
- Reagents, Services, Laboratory Protocols
- Toxicology
How to Use the Table of Web Resources for Basic Cancer Genetics Research
1. The information resources listed below are categorized as being Browsable, Queryable, Linking, or some combination of these. Browsable resources are those that allow users to navigate information using hyperlinked text. Queryable resources provide some mechanism for queries using keywords and/or controlled vocabularies. Linking resources provide mostly hyperlinks to other web sites and are often organized by a specific topic area.2. If a cell in the table has a check mark in it, the resource listed has information related to the column category.
3. If a resources requires users to register or to subscribe (usually an access fee is involved) to gain access it is noted in the table.
4. Click on the hyperlinked URL to navigate to the listed resource
Resource Name | URL | Type of Resource | Academic, Commercial, Government, Organization | Subscription or Registration Required for Access? | Animal Models | Cancer Genetics & Genomics | Pathology & Images | Reagents, Services, Lab Protocols | Toxicology |
Animal Models: Distributors and Animal Production Services | |||||||||
BioIVT | http://www.bioivt.com/ | Browsable | Com | No |
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Charles River, Inc. | http://www.criver.com/ | Browsable | Com | No |
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Envigo | http://www.envigo.com/ | Browsable | Com | No |
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Harwell Mouse Stock List | http://www.mousebook.org/stock-list | Browsable | Org | No |
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Harwell Mutagenesis Programme | http://www.har.mrc.ac.uk/research/lifetime-studies/disease-model-discovery | Browsable | Org | No |
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International Mouse Strain Resource (IMSR) | http://www.findmice.org | Browsable
Queryable |
Org | No |
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JAX Mice | http://jaxmice.jax.org/ | Browsable
Queryable Linking |
Org | No |
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Lexicon Pharmaceuticals | http://www.lexpharma.com/ | Browsable
Queryable |
Com | Register a |
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Marshall BioResources | http://www.marshallbio.com/ | Browsable | Com | No |
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Mouse Mutagenesis Center for Developmental Defects | https://www.mmrrc.org/catalog/StrainCatalogSearchForm.php?jboEvent=Search&SourceCollection=Mutagenesis+for+Dev.+Defects/Baylor | Browsable
Queryable |
Aca | No |
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Mouse Resource Browser (MRB) | http://bioit.fleming.gr/mrb/welcome.jsp# | Browsable
Queryable |
Aca | No |
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National Institute of Genetics (Japan) | http://www.shigen.nig.ac.jp/mouse/nig/ | Browsable | Aca | No |
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Taconic, Inc. | http://www.taconic.com/ | Browsable | Com | No |
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University of Michigan Transgenic Animal Model Core | http://www.med.umich.edu/tamc/ | Browsable
Linking |
Aca | No |
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UNC Systems Genetics Collaborative Cross (CC) Page | http://csbio.unc.edu/CCstatus/index.py | Browsable
Queryable |
Aca | No |
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Animal Models: Phenotypes for Genetically Defined and Genetically Engineered Animals | |||||||||
NCI Mouse Repository | http://mouse.ncifcrf.gov/ | Browsable
Queryable |
Gov | No | |||||
Transgenic List | https://mailman.ic.ac.uk/mailman/listinfo/transgenic-list | Email list server
Linking |
Org | Yes |
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Cancer Genetics and Genomics | |||||||||
Androgen Receptor Mutations Database | http://androgendb.mcgill.ca/ | Browsable
Queryable Linking |
Aca | No |
Gene-specific |
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Atlas of Genetics and Cytogenetics in Oncology and Haematology | http://atlasgeneticsoncology.org/ | Browsable
Linking |
Aca, Com | No |
Human |
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Breast Cancer Information Core (BIC) | http://research.nhgri.nih.gov/bic/ | Queryable
Browsable Linking |
Gov | Register |
Disease-specific |
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Cancer Gene Anatomy Project (CGAP) | http://cgap.nci.nih.gov/ | Browsable
Queryable Linking |
Gov | No | Human |
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Cancer Gene Census | http://cancer.sanger.ac.uk/census | Browsable | Aca | No |
Human |
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The Cancer Genome Atlas (TCGA) | http://cancergenome.nih.gov/ | Browsable Queryable |
Gov | No |
Human |
Human |
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Cancer Genome Project | http://www.sanger.ac.uk/science/groups/cancer-genome-project | Browsable | Aca | No |
Human |
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Cancer Immunome Database (CID) | https://tcia.at/home | Queryable | Org | Register | Human |
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Catalogue of Somatic Mutations In Cancer (COSMIC) | http://cancer.sanger.ac.uk/cosmic/ | Browsable Queryable |
Aca | No |
Human |
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The cBio Cancer Genomics Portal | http://cbioportal.org | Browsable Queryable |
Org | No |
Human |
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Center for Disease Control and Prevention; Cancer Prevention and Control | http://www.cdc.gov/cancer | Browsable Queryable |
Gov | No | |||||
Centre for Modeling Human Disease (CMHD) | http://www.cmhd.ca/ | Queryable | Org | Register [limited access as "guest"] | Mouse |
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Chromosomal Abnormalities in Cancer | http://www.slh.wisc.edu/cytogenetics/cancer/ | Browsable | Aca | No |
Human |
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Colon Cancer Family Registry (Colon CFR) | http://www.coloncfr.org/ | ||||||||
database of Genotypes and Phenotypes (dbGaP) | http://www.ncbi.nlm.nih.gov/gap | Browsable Queryable |
Gov | No |
Human |
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dbVar | https://www.ncbi.nlm.nih.gov/dbvar/ | ||||||||
The European Genome-phenome Archive (EGA) | https://www.ebi.ac.uk/ega/ | Browsable Queryable |
Aca | No |
Human |
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Gene Cards | http://www.genecards.org/ | Browsable
Queryable Linking |
Org | No |
Human Med. Gen. |
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HGVS Human Genome Variation Society | http://www.hgvs.org/ | Browsable
Queryable Linking |
Org | No |
Human Med. Gen. |
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Human Gene Mutation Database (HGMD) | http://www.hgmd.cf.ac.uk/ac/index.php | Browsable
Queryable Linking |
Org | No |
Human Med. Gen. |
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International Cancer Genome Consortium (ICGC) | http://www.icgc.org/ | Browsable Queryable |
Org | No |
Human |
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International Society for Gastrointestinal Hereditary Tumours (InSIGHT) | http://www.insight-group.org/ | Queryable | Org | No |
Disease-specific |
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Mouse Genome Informatics (MGI) | http://www.informatics.jax.org/ | Browsable
Queryable Linking |
Org | No |
Mouse |
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National Cancer Informatics Program | https://cbiit.cancer.gov/ncip/ncip-home | ||||||||
NCI e-mice web site | http://emice.nci.nih.gov/ | Browsable
Queryable Linking |
Gov | Register [guest registration possible] | Mouse |
Mouse |
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NCIP Hub | http://nciphub/org | Browsable Queryable |
Aca Gov |
No | |||||
Mouse Retroviral Tagged Cancer Gene Database | http://variation.osu.edu/rtcgd/ | Browsable
Queryable |
Gov | No |
Mouse |
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Mouse Tumor Biology Database (MTB) | http://tumor.informatics.jax.org/ | Browsable
Queryable Linking |
Org | No |
Mouse |
Mouse |
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MYC Target Gene Database | http://www.myccancergene.org/ | Browsable
Linking Queryable |
Aca | No | Human |
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NCI Oncogenomics Section Data Center | http://home.ccr.cancer.gov/oncology/oncogenomics/ | Queryable | Gov | Register |
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Oncogenes and Tumor Suppressor Genes in dbEST | http://www.ncbi.nlm.nih.gov/dbEST/CancerGene.html | Browsable
Linking |
Gov | No | Human |
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Oncomine (Cancer Microarray Database) | http://www.oncomine.org/ | Queryable | Aca | Register |
Human |
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Online CGH Tumor Database | http://www.webcitation.org/getfile?fileid=7f6cfd6b61c917bf3533855452cb2098ae6bf7f9 | Browsable
Queryable |
Aca | No |
Human |
Human |
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On-line Mendelian Inheritance in Man (OMIM) | http://www.omim.org | Browsable
Queryable Linking |
Gov | No |
Human Med. Gen. |
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p53 Database | http://p53.free.fr/ | Browsable
Queryable |
Org | No |
Gene-specific |
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p53 Database (IARC) | http://www-p53.iarc.fr/ | Browsable
Linking |
Org | No |
Gene-specific |
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p53 database (Human) | http://www.ibiblio.org/dnam/des_p53.htm | N/A | Aca | No |
Gene-specific |
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Prostate Expression Databases (PEDB) [Human] & (mPEDB) [mouse] | http://www.pedb.org/ | Browsable
Queryable Linking |
Aca | No |
Disease-specific |
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SAGEmap | http://www.ncbi.nlm.nih.gov/geo/browse/?view=samples&type=4 | Browsable
Linking |
Gov | No |
Human |
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SKY/M-FISH & CGH Database | https://www.ncbi.nlm.nih.gov/dbvar/studies/nstd136/ | Browsable
Queryable |
Gov | No |
Human Mouse |
Human Mouse |
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TCGA Copy Number Portal (TCGA) | http://portals.broadinstitute.org/tcga/home | ||||||||
The Tumor Gene Database | http://www.tumor-gene.org/TGDB/tgdb.html | Browsable
Queryable Linking |
Aca | No |
Human |
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Tumorscape | http://portals.broadinstitute.org/tumorscape/pages/portalHome.jsf | Browsable Queryable |
Org | Yes |
Human |
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UCSC Cancer Genome Browser | https://genome-cancer.soe.ucsc.edu | Browsable Queryable |
Aca | No |
Human |
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Pathology & Images | |||||||||
Biology of the Mammary Gland | http://www.niddk.nih.gov/research-funding/at-niddk/labs-branches/LGP/Pages/about.aspx | Browsable
Queryable Linking |
Gov | register b |
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Mouse |
Mouse |
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caIMAGE - Cancer Image Database (NCI) | https://emice.nci.nih.gov/caimage | Queryable | Gov | No |
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Human Mouse Rat Dog Macaca mulatta Tamarin |
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Comparative Pathology of Human and Mouse Breast Cancer | http://tvmouse.ucdavis.edu/bcancercd/introduction.html | Browsable | Aca | No |
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Human Mouse |
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Cellular & Molecular Pathology Branch | http://www.niehs.nih.gov/research/atniehs/labs/lep/ | Browsable
Linking |
Gov | No | Human Mouse |
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MMHCC Image Archive (UCDavis) | http://imagearchive.ucdavis.edu/ | Browsable | Aca | No |
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Mouse |
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The Visible Mouse Project | http://tvmouse.ucdavis.edu/ | Browsable
Queryable |
Aca | No |
Mouse |
Mouse |
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Pathbase | http://www.pathbase.net/ | Queryable | Org | No |
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Mouse |
Mouse Rat |
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PathoPic (Pathology - ImageDatabase) | http://alf3.urz.unibas.ch/pathopic/e/intro.htm | Queryable | Org | No |
Human |
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Pathweb, UConn's Virtual Pathology Museum | http://archive.is/v8Vv | Browsable
Queryable |
Aca | No |
Human |
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PHL Murine Immunohistochemistry Database (NCI-Frederick) | http://web.ncifcrf.gov/rtp/lasp/phl/immuno/ | Browsable
Queryable |
Gov | No | Mouse |
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Virtual Hospital: Health Information Topics for Cancer | http://www.uihealthcare.org/2column.aspx?id=239775 | Browsable | Aca | No |
Human |
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Virtual Slidebox | http://www.path.uiowa.edu/virtualslidebox/ | Browsable
Queryable |
Aca | No |
Human Mouse Rat Human Cat Cattle Dog Guinea pig Horse Monkey Pig Rabbit Zebrafish |
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WebPath Neoplasia Index | http://www-medlib.med.utah.edu/WebPath/NEOHTML/NEOPLIDX.html | Browsable | Aca | No |
Human |
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Reagents, Services, & Laboratory Protocols | |||||||||
American Type Culture Collection (ATCC) | http://www.atcc.org/ | Browsable
Queryable |
Org | No | Cells Probes Clones |
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BioIVT's immortalized cell lines | https://www.bioivt.com/cell-products/immortalized-cancer-cell-lines/ | Browsable | Com | No | |||||
Bio Lab Protocols | http://www.biolabprotocols.com/index.html | Browsable
Queryable |
Com | No |
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European Collection of Cell Cultures (ECACC) | http://www.phe-culturecollections.org.uk/ | Browsable
Queryable |
Org | No |
Cells Probes Clones |
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Human Mammary Epithelial Cells (HMEC) | http://www.lbl.gov/~mrgs/ | Browsable | Gov | No |
Cells |
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I.M.A.G.E. Consortium | http://www.imageconsortium.org/ | Browsable
Queryable Linking |
Gov | No |
Clones |
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Institute for Cancer Genetics, Lab Protocols | http://www.biolabprotocols.com/author/4087/Giorgio-Cattoretti.html | Browsable
Linking |
Aca | No | Mouse |
Protocols |
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NCI caBIG (cancer Biomedical Informatics Grid) | https://cabig.nci.nih.gov/ | Browsable
Linking |
Gov | No |
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Software Tools Datasets |
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NCI Cancer Family Registries | http://epi.grants.cancer.gov/CFR/ | Browsable | Gov | No |
Tissues Fluids |
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NCI Cooperative Breast Cancer Tissue Resource Database (CBCTR) | http://cdp.nci.nih.gov/breast// | Browsable
Queryable |
Gov | No |
Tissues |
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NCI Cooperative Human Tissue Network (CHTN) | http://chtn.nci.nih.gov/ | Browsable
Linking |
Gov | No |
Tissues Fluids Services |
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NCI Specimen Resource Locator | https://specimens.cancer.gov/ | Browsable
Linking |
Gov | No |
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NCI Tissue Expediter | https://specimens.cancer.gov/contact/ | Descriptive | Gov | No |
Services |
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PROTOCOL ONLINE DB | http://www.protocol-online.org/ | Browsable
Queryable |
Com | No |
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Takara | http://www.clonetech.com | Browsable | Com | No |
Clones CDNA-libraries |
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The University of Michigan Human Breast Cancer Cell Lines (SUM-LINES) | https://www.bioivt.com/sum-breast-cancer-cell-lines/ | Browsable | Org | No | Tissues Cells |
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Toxicology | |||||||||
Chemical Carcinogenesis Research Information System (NIH) | http://toxnet.nlm.nih.gov/cgi-bin/sis/htmlgen?CCRIS | Queryable | Gov | No |
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a. Registration only required to access Lexicon's Omnibank database.
b. Registration only required to access the Mammary Gland Gene Anatomy project data.
c. Med.Gen. = Medical Genetics
Last updated: April 2018