PDX Model DetailsTM00013

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PDX Model Summary

Model Details

Model ID (Previous ID)
TM00013 (BL0058F)
Initial Diagnosis
Urinary bladder urothelial carcinoma
Final Diagnosis
Bladder urothelial papillary carcinoma
Stage/Grade
AJCC III / Grade:high
Primary Site
Bladder
Sample Site
Bladder
Tumor Type
Primary Malignancy

Patient

Sex
Unspecified
Age (at time of tissue collection)
no data
Race/Ethnicity
Not Reported / Not Reported
Treatment Naïve?
Unknown
Current Smoker/Former Smoker
Unknown / Unknown

Engraftment

Host Strain
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ
(aka NSG or NOD Scid gamma)
Sample Type
Not Specified
Engraftment Site
no data

Molecular Data (Engrafted Tumor)

Variants

Gene Expression

Platforms: hu133, stRNA_Seq

Hatched bars indicate genes with expression levels determined to be mildly affected by alignment calculations. Details.

Gene CNV

CNV Plots

Tumor Mutation Burden

no data

Microsatellite Instability

no data

Gene Fusion

no data

Model Characterization

Histology

Summary:
P2 pathology consistent with carcinoma.
Pathologist:
Dr. Regina Gandour-Edwards, University of California, Davis

Patient tumor for PDX model TM00013.

Patient tumor for PDX model TM00013; Vimentin IHC

P0 tumor for PDX model TM00013.

P0 tumor for PDX model TM00013; Vimentin IHC

P2 tumor F037 ID011 for PDX model TM00013 stained for H&E.

P2 tumor F037 ID011 for PDX model TM00013 stained for AE1AE3. Staining was positive.

P2 tumor F037 ID011 for PDX model TM00013 stained for CD45. Staining was negative.

P2 tumor F037 ID011 for PDX model TM00013 stained for Ki67. Staining was positive.

Dosing Studies

no data

Circos Plots


Circos plot for P0 tumor #037

Circos plot for P0 tumor #039