PDX Model DetailsTM01075

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PDX Model Summary

Model Details

Model ID (Previous ID)
TM01075 (CN1032F)
Initial Diagnosis
Adenocarcinoma
Final Diagnosis
Adenocarcinoma
Stage/Grade
AJCC IV / Grade:2
Primary Site
Colon
Sample Site
Colon
Tumor Type
Primary Malignancy

Related Models

PDX models TM01075 and TM01076 originated from the same patient.

Publications citing this model

Malcolm, J; et al. Factors that influence response classifications in chemotherapy treated patient-derived xenografts (PDX). PeerJ. 2019 Mar 28;7:e6586.  10.7717/peerj.6586

Patient

Sex
Male
Age (at time of tissue collection)
no data
Race/Ethnicity
Not Reported / Not Reported
Treatment Naïve?
Yes
Current Smoker/Former Smoker
Unknown / Unknown

Engraftment

Host Strain
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ
(aka NSG or NOD Scid gamma)
Sample Type
Surgical resection (fragment)
Engraftment Site
no data

Molecular Data (Engrafted Tumor)

Variants

Gene Expression

Platforms: RNA_Seq

Hatched bars indicate genes with expression levels determined to be mildly affected by alignment calculations. Details.

Gene CNV

CNV Plots

Tumor Mutation Burden

no data

Microsatellite Instability

no data

Gene Fusion

no data

Model Characterization

Histology

Summary:
Dx: Colonic adenocarcinoma AE1/AE3 Positive; CD45 Negative. P2 pathology consistent with adenocarcinoma.
Pathologist:
Dr. Regina Gandour-Edwards, University of California, Davis

P0 tumor F136 for PDX model TM01075 stained for H&E.

P0 tumor F136 for PDX model TM01075 stained for AE1/AE3. Staining is positive.

P0 tumor F136 for PDX model TM01075 stained for CD45. Staining is negative.

P1 tumor F136 P0142 P for PDX model TM01075 stained for H&E.

P1 tumor F136 P0142 P for PDX model TM01075 stained for AE1/AE3. Staining was positive.

P1 tumor F136 P0142 P for PDX model TM01075 stained for CD45. Staining was negative.

P2 tumor F136 ID013 for PDX model TM01075 stained for H&E.

Dosing Studies

Circos Plots

no data