Publications & PresentationsPublications about MMHCdb

Publications

• PDX Finder: A portal for patient-derived tumor xenograft model discovery. 2019. Conte N, Mason JC, Halmagyi C, Neuhauser S, Mosaku A, Yordanova G, Chatzipli A, Begley DA, Krupke DM, Parkinson H, Meehan TF, Bult CJ. Nucleic Acids Res. 2019 Jan 8;47(D1):D1073-D1079. https://doi.org/10.1093/nar/gky984
• The Mouse Tumor Biology Database: A Comprehensive Resource for Mouse Models of Human Cancer. 2017. Krupke DM, Begley DA, Sundberg JP, Richardson JE, Neuhauser SB, Bult CJ. Cancer Res. 2017 Nov 1;77(21):e67-e70. https://doi.org/10.1158/0008-5472.CAN-17-0584
• PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models. 2017. Meehan TF, Conte N, Goldstein T, Inghirami G, Murakami MA, Brabetz S, Gu Z, Wiser JA, Dunn P, Begley DA, Krupke DM, Bertotti A, Bruna A, Brush MH, Byrne AT, Caldas C, Christie AL, Clark DA, Dowst H, Dry JR, Doroshow JH, Duchamp O, Evrard YA, Ferretti S, Frese KK, Goodwin NC, Greenawalt D, Haendel MA, Hermans E, Houghton PJ, Jonkers J, Kemper K, Khor TO, Lewis MT, Lloyd KCK, Mason J, Medico E, Neuhauser SB, Olson JM, Peeper DS, Rueda OM, Seong JK, Trusolino L, Vinolo E, Wechsler-Reya RJ, Weinstock DM, Welm A, Weroha SJ, Amant F, Pfister SM, Kool M, Parkinson H, Butte AJ, Bult CJ. Cancer Res. 2017 Nov 1;77(21):e62-e66. https://doi.org/10.1158/0008-5472.CAN-17-0582
• Finding mouse models of human lymphomas and leukemia's using the Jackson laboratory mouse tumor biology database. 2015. Begley DA, Sundberg JP, Krupke DM, Neuhauser SB, Bult CJ, Eppig JT, Morse HC 3rd, Ward JM. Exp Mol Pathol. 2015 Dec;99(3):533-536. https://doi.org/10.1016/j.yexmp.2015.07.004
• Mouse Tumor Biology (MTB): a database of mouse models for human cancer. 2015. Bult CJ, Krupke DM, Begley DA, Richardson JE, Neuhauser SB, Sundberg JP, Eppig JT. Nucleic Acids Res. 2015 Jan 28;43(Database issue):D818-D824. https://doi.org/10.1093/nar/gku987
• Identifying mouse models for skin cancer using the Mouse Tumor Biology Database. 2014. Begley DA, Krupke DM, Neuhauser SB, Richardson JE, Schofield PN, Bult CJ, Eppig JT, Sundberg JP. Exp Dermatol. 2014 Oct;23(10):761-763. https://doi.org/10.1111/exd.12512
• The Mouse Tumor Biology Database (MTB): a central electronic resource for locating and integrating mouse tumor pathology data. 2012. Begley DA, Krupke DM, Neuhauser SB, Richardson JE, Bult CJ, Eppig JT, Sundberg JP. Vet Pathol. 2012 Jan;49(1):218-223. https://doi.org/10.1177/0300985810395726
• The Mouse Tumor Biology database. 2008. Krupke DM, Begley DA, Sundberg JP, Bult CJ, Eppig JT. Nat Rev Cancer. 2008 Jun;8(6):459-465. https://doi.org/10.1038/nrc2390
• Mouse Tumor Biology Database (MTB): status update and future directions. 2007. Begley DA, Krupke DM, Vincent MJ, Sundberg JP, Bult CJ, Eppig JT. Nucleic Acids Res. 2007 Jan;35(Database issue):D638-D642. https://doi.org/10.1093/nar/gkl983
• A natural language processing (NLP) tool to assist in the curation of the laboratory Mouse Tumor Biology Database. 2006. Xu H, Krupke D, Blake J, Friedman C. AMIA Annu Symp Proc. 2006:1150. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839428/
• NetWatch: DATABASE: Mouse Cancer Central. 2006. Leslie M. Science. 2006 Aug 4;313(5787):595. https://science.sciencemag.org/content/313/5787/netwatch
• The Mouse Tumor Biology Database: integrated access to mouse cancer biology data. 2005. Krupke D, Näf D, Vincent M, Allio T, Mikaelian I, Sundberg J, Bult C, Eppig J. Exp Lung Res. 2005 Mar;31(2):259-270. https://doi.org/10.1080/01902140490495633
• Antibodies that label paraffin-embedded mouse tissues: a collaborative endeavor. 2004. Mikaelian I, Nanney LB, Parman KS, Kusewitt DF, Ward JM, Näf D, Krupke DM, Eppig JT, Bult CJ, Seymour R, Ichiki T, Sundberg JP. Toxicol Pathol. 2004 Mar-Apr;32(2):181-191. https://www.ncbi.nlm.nih.gov/pubmed/15200156
• Web Watch: Bringing mice together. 2004. Flintoft L. Nat Rev Cancer. 2004 Apr 1;4(4):246. https://doi.org/10.1038/nrc1337
• The Mouse Tumor Biology Database: a public resource for cancer genetics and pathology of the mouse. 2002. Näf D, Krupke DM, Sundberg JP, Eppig JT, Bult CJ. Cancer Res. 2002 Mar 1;62(5):1235-1240. http://cancerres.aacrjournals.org/content/62/5/1235.long
• Web-based access to mouse models of human cancers: the Mouse Tumor Biology (MTB) Database. 2001. Bult CJ, Krupke DM, Näf D, Sundberg JP, Eppig JT. Nucleic Acids Res. 2001 Jan 1;29(1):95-97. https://doi.org/10.1093/nar/29.1.95
• Mouse tumor biology database (MTB): enhancements and current status. 2000. Bult CJ, Krupke DM, Sundberg JP, Eppig JT. Nucleic Acids Res. 2000 Jan 1;28(1):112-114. https://doi.org/10.1093/nar/28.1.112
• A survey of web resources for basic cancer genetics research. 1999. Bult CJ, Krupke DM, Tennent BJ, Eppig JT. Genome Res. 1999 May;9(5):397-408. https://genome.cshlp.org/content/9/5/397.long
• Electronic access to mouse tumor data: the Mouse Tumor Biology Database (MTB) project. 1999. Bult CJ, Krupke DM, Eppig JT. Nucleic Acids Res. 1999 Jan 1;27(1):99-105. https://doi.org/10.1093/nar/27.1.99

Posters

• Mouse Models of Human Cancer Database (MMHCdb) New Visualization Tools

  Debra M. Krupke, Dale A. Begley, Steven B. Neuhauser, Andrew Currier, Joel E. Richardson, John P. Sundberg, and Carol J. Bult

  https://doi.org/10.7490/f1000research.1116709.1

  12th International Biocuration Conference

  Cambridge, United Kingdom
  6-10 April 2019

  

• Building a Better "Trap" to Capture Information on Mouse Study Populations

  Susan M. Bello, Debra M. Krupke, Cynthia L. Smith, and Carol J. Bult

  https://doi.org/10.7490/f1000research.1116565.1

  12th International Biocuration Conference

  Cambridge, United Kingdom
  6-10 April 2019

  

• PDX Like Me: A molecular profile-based search tool

  Dale A. Begley, Debra M. Krupke, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, and Carol J. Bult

  AACR Annual Meeting 2019

  Atlanta, Georgia
  29 March-3 April 2019

  

• Identifying relevant mouse models of human cancer using the Mouse Tumor Biology database (MTB)

  Dale A. Begley, Debra M. Krupke, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, and Carol J. Bult

  AACR Annual Meeting 2018

  Chicago, Illinois
  14–18 April 2018

  

• Mouse Tumor Biology (MTB) database - An integrated data resource for GEM, inbred strains, and PDX models of human cancer

  Debra M. Krupke, Dale A. Begley, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, and Carol J. Bult

  Advances in Modeling Cancer in Mice: Technology, Biology & Beyond

  Orlando, Florida
  24-27 September 2017

  

• MTB: A compendium of mouse models of human cancer

  Dale A. Begley, Debra M. Krupke, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, and Carol J. Bult

  PDX finder: an open global catalogue of PDX models for the cancer research community

  Steven B. Neuhauser, Dale A. Begley, Debra M. Krupke, Carol J. Bult, Terry Meehan, Jeremy Mason, Nathalie Conte, Csaba Halmagyi, and Helen Parkinson

  ITCR 2017 Annual Meeting

  Santa Cruz, California
  31 May-1 June 2017

  

• Identifying therapeutically relevant mouse and patient derived xenograft (PDX) models of human cancer using the Mouse Tumor Biology database (MTB) data resource

  Dale A. Begley, Debra M. Krupke, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, Janan T. Eppig, and Carol J. Bult

  AACR Annual Meeting 2017

  Washington, D.C.
  1-5 April 2017

  

• The Mouse Tumor Biology database (MTB): An integrated data resource for mouse and patient derived xenograft (PDX) models of human cancer

  Dale A. Begley, Debbie M. Krupke, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, Janan T. Eppig, and Carol J. Bult

  AACR Annual Meeting 2016

  New Orleans, Louisiana
  16-20 April 2016

  

• Mouse Tumor Biology (MTB) Database - data visualization via a faceted search interface

  Debra M. Krupke, Dale A. Begley, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, Carol J. Bult, and Janan T. Eppig

  https://doi.org/10.7490/f1000research.1111878.1

  9th International Biocuration Conference

  Geneva, Switzerland
  10-14 April 2016

  

• Mouse Tumor Biology Database - a tool for comparative cancer genomics

  Debra M. Krupke, Dale A. Begley, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, Carol J. Bult, and Janan T. Eppig

  Beyond the Genome: Cancer genomics

  Boston, Massachusetts
  8-10 October 2014

  

• The Mouse Tumor Biology Database (MTB): A Comprehensive Data Resource for Mouse Models and Patient Derived Xenograft Studies

  Dale A. Begley, Debra M. Krupke, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, Carol J. Bult, and Janan T. Eppig

  Mechanisms & Models of Cancer

  Cold Spring Harbor, New York
  12-16 August 2014

  

• Interpreting the cancer genome using the Mouse Tumor Biology (MTB) Database

  Debra M. Krupke, Dale A. Begley, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, Carol J. Bult, and Janan T. Eppig

  Third AACR International Conference on Frontiers in Basic Cancer Research

  National Harbor, Maryland
  18-22 September 2013

  

• Mouse Tumor Biology (MTB) Database - Tools to Facilitate Comparative Human and Mouse Genetic Studies

  Debra M. Krupke, Dale A. Begley, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, Carol J. Bult, and Janan T. Eppig

  5th International Biocuration Conference

  Washington, D.C.
  2-4 April 2012

  

• Exploring the Mouse Cancer Genome Using the Mouse Tumor Biology (MTB) Database

  Debra M. Krupke, Dale A. Begley, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, Carol J. Bult, and Janan T. Eppig

  Changing Landscape of the Cancer Genome

  Boston, Massachusetts
  20-25 June 2011

  

• Facilitating Access to Gene Expression Data via the Mouse Tumor Biology (MTB) Database

  Debra M. Krupke, Dale A. Begley, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, Carol J. Bult, and Janan T. Eppig

  Beatson International Cancer Conference: The Multiple Tiers of Gene Regulation in Cancer

  Glasgow, Scotland
  4-7 July 2010

  

• Cancer Biology Data Curation at the Mouse Tumor Biology Database (MTB)

  Debra M. Krupke, Dale A. Begley, Steven B. Neuhauser, Joel E. Richardson, John P. Sundberg, Carol J. Bult, and Janan T. Eppig

  3rd International Biocuration Conference

  Berlin, Germany
  16-19 April 2009

  

• Literature Triage and Indexing in the Mouse Genome Informatics (MGI) Group

  Randal P. Babiuk, Dale A. Begley, Susan M. Bello, Dirck W. Bradt, Donna L. Burkart, Howard Dene, Alexander D. Diehl, Harold J. Drabkin, Jacqueline H. Finger, Terry F. Hayamizu, David P. Hill, Michelle Knowlton, Debra M. Krupke, Ira Lu, Lois J. Maltais, Monica McAndrews-Hill, Terrence F. Meehan, Li Ni, Hiroaki Onda, Dmitry Sitnikov, Constance M. Smith, Cynthia L. Smith, and Monika Tomczuk

  3rd International Biocuration Conference

  Berlin, Germany 16-19 April 2009

  

• Exploring Cancer Biology Using the Mouse Tumor Biology (MTB) Database

  Debra M. Krupke, Dale A. Begley, Matthew J. Vincent, Carol J. Bult, John P. Sundberg, and Janan T. Eppig

  Oncogenomics 2007

  Phoenix, Arizona
  31 January-3 February 2007

  

• "Mouse Cancer Central": The Mouse Tumor Biology (MTB) Database

  Debra M. Krupke, Dale A. Begley, Matthew J. Vincent, Carol J. Bult, John P. Sundberg, and Janan T. Eppig

  Mouse Models of Cancer

  Cambridge, Massachusetts 25-28 October 2006

  

• The Mouse Tumor Biology (MTB) Database: Electronic Access to Data on Mouse Models of Cancer

  Debra M. Krupke, Theresa C. Allio, Matthew J. Vincent, Carol J. Bult, Igor Mikaelian, John P. Sundberg, and Janan T. Eppig

  Oncogenomics 2005

  San Diego, California
  2-6 February 2005

  

• Integrated Access to Mouse Cancer Imaging Data: The Mouse Tumor Biology (MTB) Database

  Debra M. Krupke, Carol J. Bult, Matthew J. Vincent, Igor Mikaelian, John P. Sundberg, and Janan T. Eppig

  2004 Miami Nature Biotechnology Winter Symposium: The Cell Cycle, Chromosomes and Cancer

  Miami Beach, Florida
  1-4 February 2004

  

• Data visualization for mouse models of cancer: The Mouse Tumor Biology (MTB) Database's Tumor Frequency Grid

  Debra M. Krupke, Dieter Näf, Carol J. Bult, John P. Sundberg, and Janan T. Eppig

  Oncogenomics 2003: Dissecting Cancer Through Genome Research

  Phoenix, Arizona 29 January-2 February 2003

  

• The Mouse Tumor Biology (MTB) Database: Integrated Access to Mouse Cancer Model Data

  Debra M. Krupke, Dieter Näf, Carol J. Bult, John P. Sundberg, and Janan T. Eppig

  Oncogenomics 2002: Dissecting Cancer Through Genome Research

  Dublin, Ireland
  1-5 May 2002

  

• Electronic Access to Data from Mouse Cancer Models: The Mouse Tumor Biology (MTB) Database

  Debra M. Krupke, Carol J. Bult, Dieter Näf, John P. Sundberg, and Janan T. Eppig

  Mouse Models of Cancer

  La Jolla, California
  29 November-3 December 2000

  

• Electronic Access to Data from Mouse Cancer Models: The Mouse Tumor Biology (MTB) Database

  Debra M. Krupke, Carol J. Bult, John P. Sundberg, and Janan T. Eppig

  2000 Miami Nature Biotechnology Winter Symposium: DNA, RNA and Cancer

  Miami Beach, Florida
  5-9 February 2000